Nitrospinota
| Nitrospinota | |
|---|---|
Scientific classification 
| |
| Domain: | Bacteria |
| Kingdom: | Pseudomonadati |
| Phylum: | Nitrospinota Lücker et al. 2021[1] |
| Class[2] | |
| Synonyms | |
| |
Nitrospinota is a bacterial phylum. Despite only few described species, members of this phylum are major nitrite-oxidizing bacteria in surface waters in oceans. By oxidation of nitrite to nitrate they are important in the process of nitrification in marine environments.[3]
Although the genus Nitrospina is an aerobic bacterium, it was shown to oxidize nitrite also in oxygen minimum zone of the ocean. Depletion of oxygen in such zones leads to preference of anaerobic processes such as denitrification and nitrogen loss through anammox. Nitrospina thus outweigh nitrogen loss by nitrification also in these oxygen depleted zones.[4][5]
Among the cultivated isolates within the genus Nitrospina are Nitrospina gracilis[6][3] and Nitrospina watsonii.[7] Further genomes were resolved by culture-independent metagenome binning.[5] The two Nitrospina species are, however, distantly related to environmentally abundant uncultured Nitrospinota.[8] The two other strains were cultivated in 2020 each in the binary culture with alphaproteobacterial heterotroph. They are called "Candidatus Nitrohelix vancouverensis" and "Candidatus Nitronauta litoralis". "Nitrohelix vancouverensis" is closely related to uncultivated environmentally abundant Nitrospinota clades 1 and 2.[8]
Taxonomy
[edit]| Phylogeny of Nitrospinota[9][10][11] | ||||||||||||||||||||||||||||||
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The currently accepted taxonomy is based on the List of Prokaryotic names with Standing in Nomenclature (LPSN) [12] and National Center for Biotechnology Information (NCBI)[13]
- Class Nitrospinia Lucker et al. 2022
- Order Nitrospinales Lücker et al. 2022
- Family Nitrospinaceae Garrity, Bell & Lilburn 2006
- Genus "Candidatus Nitrohelix" Mueller et al. 2021
- "Ca. N. vancouverensis" Mueller et al. 2021
- Genus "Candidatus Nitromaritima" Ngugi et al. 2016
- Genus "Candidatus Nitronauta" Mueller et al. 2021
- "Ca. N. litoralis" Mueller et al. 2021
- Genus Nitrospina Watson & Waterbury 1971
- N. gracilis Watson & Waterbury 1971
- "N. watsonii" Spieck et al. 2014
- Genus "Candidatus Nitrohelix" Mueller et al. 2021
- Family Nitrospinaceae Garrity, Bell & Lilburn 2006
- Order Nitrospinales Lücker et al. 2022
See also
[edit]References
[edit]- ^ Oren A, Garrity GM (2021). 239887308.
- ^ "Nitrospinae". Global Biodiversity Information Facility. Retrieved 5 September 2021.
- ^ a b Lücker S, Nowka B, Rattei T, Spieck E, Daims H (2013). 23439773.
- ^ Beman JM, Leilei Shih J, Popp BN (November 2013). 3806268. PMID 23804152.
- ^ a b Sun X, Kop LF, Lau MC, Frank J, Jayakumar A, Lücker S, Ward BB (October 2019). 6776041. PMID 31118472.
- ^ Watson, Stanley W.; Waterbury, John B. (1971). 0302-8933. S2CID 35169111.
- ^ Spieck, Eva; Keuter, Sabine; Wenzel, Thilo; Bock, Eberhard; Ludwig, Wolfgang (May 2014). 0723-2020. PMID 24581679.
- ^ a b Mueller, Anna J.; Jung, Man-Young; Strachan, Cameron R.; Herbold, Craig W.; Kirkegaard, Rasmus H.; Wagner, Michael; Daims, Holger (March 2021). 1751-7362. PMC 33067588.
- ^ "GTDB release 09-RS220". Genome Taxonomy Database. Retrieved 10 May 2024.
- ^ "bac120_r220.sp_labels". Genome Taxonomy Database. Retrieved 10 May 2024.
- ^ "Taxon History". Genome Taxonomy Database. Retrieved 10 May 2024.
- ^ J.P. Euzéby. ""Nitrospinae"". List of Prokaryotic names with Standing in Nomenclature (LPSN). Retrieved 2020-11-17.
- ^ .Sayers; et al. "Nitrospinae". National Center for Biotechnology Information (NCBI) taxonomy database. Retrieved 2020-11-17.